Difference between revisions of "YdbD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol stress | |style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol stress | ||
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| + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04430 ydbD] | ||
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 4.858 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 4.858 | ||
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|colspan="2" | '''Genetic context''' <br/> [[Image:ydbD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ydbD_context.gif]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
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| + | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydbD_495740_496561_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:ydbD_expression.png|500px]] | ||
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__TOC__ | __TOC__ | ||
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** ''[[ydbD]]'' | ** ''[[ydbD]]'' | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydbD_495740_496561_-1 ydbD] {{PubMed|22383849}} |
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| + | * '''Sigma factor:''' | ||
** ''ydbD'': [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | ** ''ydbD'': [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | ||
Revision as of 11:49, 7 August 2012
| Gene name | ydbD |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | survival of ethanol stress |
| Gene expression levels in SubtiExpress: ydbD | |
| MW, pI | 30 kDa, 4.858 |
| Gene length, protein length | 819 bp, 273 aa |
| Immediate neighbours | ydbC, dctB |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), resistance against oxidative and electrophile stress
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04430
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 2 H2O2 = O2 + 2 H2O (according to Swiss-Prot)
- Protein family: manganese catalase family (according to Swiss-Prot)
- Paralogous protein(s): YjqC
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P80878
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
Kei Asai, Sang-Hoon Baik, Yasuhiro Kasahara, Shigeki Moriya, Naotake Ogasawara
Regulation of the transport system for C4-dicarboxylic acids in Bacillus subtilis.
Microbiology (Reading): 2000, 146 ( Pt 2);263-271
[PubMed:10708364]
[WorldCat.org]
[DOI]
(P p)
