Difference between revisions of "YqiK"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU24180 yqiK]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24180 yqiK]
 
|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26 kDa, 6.432   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26 kDa, 6.432   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mmgA]]'', ''[[yqiI]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mmgA]]'', ''[[yqiI]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14349&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU24180 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU24180 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU24180 Advanced_DNA]
 
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Revision as of 13:15, 13 May 2013

  • Description: cytoplasmic glycerophosphodiester phosphodiesterase

Gene name yqiK
Synonyms
Essential no
Product cytoplasmic glycerophosphodiester phosphodiesterase
Function unknown
Gene expression levels in SubtiExpress: yqiK
MW, pI 26 kDa, 6.432
Gene length, protein length 717 bp, 239 aa
Immediate neighbours mmgA, yqiI
Sequences Protein DNA Advanced_DNA
Genetic context
YqiK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YqiK expression.png

















Categories containing this gene/protein

utilization of lipids

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU24180

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • only expressed under conditions of high osmolarity PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Kathleen E Fischer, Erhard Bremer
Activity of the osmotically regulated yqiHIK promoter from Bacillus subtilis is controlled at a distance.
J Bacteriol: 2012, 194(19);5197-208
[PubMed:22843846] [WorldCat.org] [DOI] (I p)

Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849] [WorldCat.org] [DOI] (I p)