Difference between revisions of "ThyB"

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|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of thymidine nucleotides  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of thymidine nucleotides  
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU21820 thyB]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU21820 thyB]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/ThyB ThyB]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/ThyB ThyB]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dfrA]]'', ''[[ypjQ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dfrA]]'', ''[[ypjQ]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14100&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU21820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU21820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU21820 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:thyB_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:thyB_context.gif]]

Revision as of 13:06, 13 May 2013

  • Description: thymidylate synthase B

Gene name thyB
Synonyms
Essential no
Product thymidylate synthase B
Function biosynthesis of thymidine nucleotides
Gene expression levels in SubtiExpress: thyB
Interactions involving this protein in SubtInteract: ThyB
Metabolic function and regulation of this protein in SubtiPathways:
Nucleotides (regulation)
MW, pI 30 kDa, 6.272
Gene length, protein length 792 bp, 264 aa
Immediate neighbours dfrA, ypjQ
Sequences Protein DNA Advanced_DNA
Genetic context
ThyB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
ThyB expression.png




























Categories containing this gene/protein

biosynthesis/ acquisition of nucleotides, phosphoproteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU21820

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP (according to Swiss-Prot)
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
    • phosphorylated on Arg-102 PubMed
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • weak induction in the presence of glucose (CcpN) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References