Difference between revisions of "YocK"

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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
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* '''[[SubtInteract|Interactions]]:'''  
  
* '''Localization:'''
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* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yocK_2097126_2097617_-1 yocK] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yocK_2097126_2097617_-1 yocK] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigB]] {{PubMed|10220166,15805528}}  
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* '''[[Sigma factor]]:''' [[SigB]] {{PubMed|10220166,15805528}}  
  
 
* '''Regulation:'''  induced by stress ([[SigB]]) {{PubMed|10220166,15805528}}
 
* '''Regulation:'''  induced by stress ([[SigB]]) {{PubMed|10220166,15805528}}

Revision as of 21:09, 15 March 2013

  • Description: general stress protein

Gene name yocK
Synonyms
Essential no
Product general stress protein
Function survival of ethanol stress
Gene expression levels in SubtiExpress: yocK
MW, pI 23 kDa, 4.701
Gene length, protein length 627 bp, 209 aa
Immediate neighbours azoR1, yocL
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YocK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YocK expression.png















Categories containing this gene/protein

general stress proteins (controlled by SigB)

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU19240

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: azoreductase type 1 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)

Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166] [WorldCat.org] [DOI] (P p)