Difference between revisions of "OxdD"

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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1176 bp, 392 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1176 bp, 392 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yoaM]]'', ''[[yoaO]]''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yozS]]'', ''[[yoaO]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13759&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13759&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''

Revision as of 10:35, 3 December 2012

  • Description: oxalate decarboxylase, spore coat protein

Gene name oxdD
Synonyms yoaN
Essential no
Product oxalate decarboxylase
Function unknown
Gene expression levels in SubtiExpress: oxdD
MW, pI 43 kDa, 5.359
Gene length, protein length 1176 bp, 392 aa
Immediate neighbours yozS, yoaO
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YoaN context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
OxdD expression.png
























Categories containing this gene/protein

sporulation proteins, resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU18670

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Oxalate = formate + CO2 (according to Swiss-Prot)
  • Protein family: UPF0361 family (according to Swiss-Prot)
  • Paralogous protein(s): OxdC

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
    • expressed late during sporulation in the mother cell (SigK, GerE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Miia R Mäkelä, Kristiina Hildén, Taina K Lundell
Oxalate decarboxylase: biotechnological update and prevalence of the enzyme in filamentous fungi.
Appl Microbiol Biotechnol: 2010, 87(3);801-14
[PubMed:20464388] [WorldCat.org] [DOI] (I p)

Original publications