Difference between revisions of "YmcA"
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* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
| + | ** [[YmcA]]-[[YlbF]]-[[YaaT]], this complex stimulates [[Spo0A]] phosphorylation in the [[phosphorelay]] {{PubMed|22383849}} | ||
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ymcA_1774374_1774805_1 ymcA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ymcA_1774374_1774805_1 ymcA] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | <pubmed>15661000,,15175311, </pubmed> | + | <pubmed>15661000,22383849,15175311, </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 12:27, 27 March 2013
- Description: antagonist of biofilm repression by SinR
| Gene name | ymcA |
| Synonyms | |
| Essential | no |
| Product | antagonist of biofilm repression by SinR |
| Function | control of biofilm formation |
| Gene expression levels in SubtiExpress: ymcA | |
| MW, pI | 16 kDa, 5.086 |
| Gene length, protein length | 429 bp, 143 aa |
| Immediate neighbours | ymcB, cotE |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
transcription factors and their control, biofilm formation
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17020
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 2PIH
- UniProt: O31779
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
