Difference between revisions of "YlaD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[sigma factor]] [[YlaC]] | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[sigma factor]] [[YlaC]] | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14740 ylaD] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YlaD YlaD] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YlaD YlaD] | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylaC]]'', ''[[ylaE]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylaC]]'', ''[[ylaE]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14740 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14740 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14740 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ylaD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ylaD_context.gif]] | ||
Revision as of 12:44, 13 May 2013
- Description: anti-Sigma(YlaC)
| Gene name | ylaD |
| Synonyms | |
| Essential | no |
| Product | anti-Sigma(YlaC) |
| Function | control of sigma factor YlaC |
| Gene expression levels in SubtiExpress: ylaD | |
| Interactions involving this protein in SubtInteract: YlaD | |
| MW, pI | 11 kDa, 4.473 |
| Gene length, protein length | 291 bp, 97 aa |
| Immediate neighbours | ylaC, ylaE |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
sigma factors and their control, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU14740
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O07628
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Han-Bong Ryu, Inji Shin, Hyung-Soon Yim, Sa-Ouk Kang
YlaC is an extracytoplasmic function (ECF) sigma factor contributing to hydrogen peroxide resistance in Bacillus subtilis.
J Microbiol: 2006, 44(2);206-16
[PubMed:16728958]
[WorldCat.org]
(P p)
Takashi Matsumoto, Kaoru Nakanishi, Kei Asai, Yoshito Sadaie
Transcriptional analysis of the ylaABCD operon of Bacillus subtilis encoding a sigma factor of extracytoplasmic function family.
Genes Genet Syst: 2005, 80(6);385-93
[PubMed:16501307]
[WorldCat.org]
[DOI]
(P p)
