Difference between revisions of "BsdD"

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* '''Description:''' phenolic acid decarboxylase, reversible nonoxidative vanillate/4-hydroxybenzoate decarboxylase subunit<br/><br/>
  
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || resistance to salicylic acid
 
|style="background:#ABCDEF;" align="center"|'''Function''' || resistance to salicylic acid
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03651 bsdD]
 
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8.6 kDa, 5.355   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8.6 kDa, 5.355   
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|colspan="2" | '''Genetic context''' <br/> [[Image:yclD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yclD_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bsdD_414595_414822_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:bsdD_expression.png|500px]]
 
 
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* '''Operon:''' ''[[bsdB]]-[[bsdC]]-[[bsdD]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/17295427 PubMed]
 
* '''Operon:''' ''[[bsdB]]-[[bsdC]]-[[bsdD]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/17295427 PubMed]
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bsdD_414595_414822_1 bsdD] {{PubMed|22383849}}
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* '''[[Sigma factor]]:'''  
 
 
* '''Sigma factor:'''  
 
  
 
* '''Regulation:''' induced by salicylic acid ([[BsdA]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17295427 PubMed]
 
* '''Regulation:''' induced by salicylic acid ([[BsdA]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17295427 PubMed]

Revision as of 11:06, 7 August 2012

  • Description: phenolic acid decarboxylase, reversible nonoxidative vanillate/4-hydroxybenzoate decarboxylase subunit

Gene name bsdD
Synonyms
Essential no
Product phenolic acid decarboxylase
Function resistance to salicylic acid
MW, pI 8.6 kDa, 5.355
Gene length, protein length 225 bp, 75 aa
Immediate neighbours bsdC, yclD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YclD context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)

This gene is a member of the following regulons

BsdA regulon

The gene

Basic information

  • Locus tag: BSU03651

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: induced by salicylic acid (BsdA) PubMed
  • Regulatory mechanism: BsdA: transcription activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Boguslaw Lupa, Delina Lyon, Lindsey N Shaw, Magdalena Sieprawska-Lupa, Juergen Wiegel
Properties of the reversible nonoxidative vanillate/4-hydroxybenzoate decarboxylase from Bacillus subtilis.
Can J Microbiol: 2008, 54(1);75-81
[PubMed:18388975] [WorldCat.org] [DOI] (P p)

Nguyen Van Duy, Ulrike Mäder, Ngoc Phuong Tran, Jean-François Cavin, Le Thi Tam, Dirk Albrecht, Michael Hecker, Haike Antelmann
The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid.
Proteomics: 2007, 7(5);698-710
[PubMed:17295427] [WorldCat.org] [DOI] (P p)

Boguslaw Lupa, Delina Lyon, Moreland D Gibbs, Rosalind A Reeves, Juergen Wiegel
Distribution of genes encoding the microbial non-oxidative reversible hydroxyarylic acid decarboxylases/phenol carboxylases.
Genomics: 2005, 86(3);342-51
[PubMed:15979273] [WorldCat.org] [DOI] (P p)