Difference between revisions of "YbcM"
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| − | + | * '''Description:''' similar to glucosamine-fructose-6-phosphate aminotransferase <br/><br/> | |
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown | ||
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 4.787 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 4.787 | ||
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|colspan="2" | '''Genetic context''' <br/> [[Image:ybcM_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ybcM_context.gif]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
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__TOC__ | __TOC__ | ||
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* '''Operon:''' | * '''Operon:''' | ||
| − | * | + | * '''[[Sigma factor]]:''' |
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* '''Regulation:''' induced by rhamnogalacturonan [http://www.ncbi.nlm.nih.gov/pubmed/17449691 PubMed] | * '''Regulation:''' induced by rhamnogalacturonan [http://www.ncbi.nlm.nih.gov/pubmed/17449691 PubMed] | ||
Revision as of 10:43, 7 August 2012
- Description: similar to glucosamine-fructose-6-phosphate aminotransferase
| Gene name | ybcM |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 11 kDa, 4.787 |
| Gene length, protein length | 312 bp, 104 aa |
| Immediate neighbours | ybcL, skfA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU01900
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31421
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation: induced by rhamnogalacturonan PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691]
[WorldCat.org]
[DOI]
(P p)
