Difference between revisions of "TruA"

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* '''Description:''' pseudouridylate synthase I, [[universally conserved protein]] <br/><br/>
  
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification  
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU01480 truA]
 
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 6.652   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 6.652   
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|colspan="2" | '''Genetic context''' <br/> [[Image:truA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:truA_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=truA_152937_153680_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:truA_expression.png|500px]]
 
 
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* '''Operon:'''  
 
* '''Operon:'''  
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=truA_152937_153680_1 truA] {{PubMed|22383849}}
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* '''[[Sigma factor]]:'''  
 
 
* '''Sigma factor:'''  
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
* '''Additional information:'''
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* '''Additional information:'''  
  
 
=Biological materials =
 
=Biological materials =

Revision as of 10:39, 7 August 2012

Gene name truA
Synonyms ybaH
Essential no
Product pseudouridylate synthase I
Function tRNA modification
MW, pI 27 kDa, 6.652
Gene length, protein length 741 bp, 247 aa
Immediate neighbours ybaF, rplM
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
TruA context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

translation, universally conserved proteins

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU01480

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: tRNA uridine = tRNA pseudouridine (according to Swiss-Prot)
  • Protein family: tRNA pseudouridine synthase truA family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

universally conserved protein

Expression and regulation

  • Operon:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References