Difference between revisions of "YdfI"

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(Extended information on the protein)
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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:''' [[YdfH]]-[[YdfI]]
+
* '''[[SubtInteract|Interactions]]:'''
 +
** [[YdfH]]-[[YdfI]]
  
* '''Localization:''' cytoplasm (according to Swiss-Prot)
+
* '''[[Localization]]:'''  
 +
** cytoplasma (according to Swiss-Prot)
  
 
=== Database entries ===
 
=== Database entries ===

Revision as of 19:38, 3 June 2012

Gene name ydfI
Synonyms
Essential no
Product two-component response regulator
Function control of ydfJ expression
Interactions involving this protein in SubtInteract: YdfI
MW, pI 23 kDa, 5.378
Gene length, protein length 639 bp, 213 aa
Immediate neighbours ydfH, ydfJ
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdfI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdfI expression.png
























Categories containing this gene/protein

transcription factors and their control, phosphoproteins

This gene is a member of the following regulons

The YdfI regulon:

The gene

Basic information

  • Locus tag: BSU05420

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification: phosphorylation by YdfH on an Asp residue
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Masakuni Serizawa, Junichi Sekiguchi
The Bacillus subtilis YdfHI two-component system regulates the transcription of ydfJ, a member of the RND superfamily.
Microbiology (Reading): 2005, 151(Pt 6);1769-1778
[PubMed:15941986] [WorldCat.org] [DOI] (P p)

C Fabret, V A Feher, J A Hoch
Two-component signal transduction in Bacillus subtilis: how one organism sees its world.
J Bacteriol: 1999, 181(7);1975-83
[PubMed:10094672] [WorldCat.org] [DOI] (P p)