Difference between revisions of "YcbJ"

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|colspan="2" | '''Genetic context''' <br/> [[Image:ycbJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ycbJ_context.gif]]
 
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ycbJ_275838_276758_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ycbJ_expression.png|500px]]
 
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Revision as of 13:36, 18 April 2012

  • Description: similar to macrolide 2'-phosphotransferase

Gene name ycbJ
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 34 kDa, 4.565
Gene length, protein length 918 bp, 306 aa
Immediate neighbours ycbH, rtpA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YcbJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcbJ expression.png
























Categories containing this gene/protein

resistance against toxins/ antibiotics

This gene is a member of the following regulons

AbrB regulon, YcbG regulon

The gene

Basic information

  • Locus tag: BSU02520

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: aminoglycoside phosphotransferase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)

Shigeo Hosoya, Kunio Yamane, Michio Takeuchi, Tsutomu Sato
Identification and characterization of the Bacillus subtilis D-glucarate/galactarate utilization operon ycbCDEFGHJ.
FEMS Microbiol Lett: 2002, 210(2);193-9
[PubMed:12044674] [WorldCat.org] [DOI] (P p)