Difference between revisions of "YdhK"

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m (Reverted edits by 134.76.70.252 (talk) to last revision by Lflorez)
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* '''Operon:''' ''ydhK'' (according to [http://dbtbs.hgc.jp/COG/prom/ydhK.html DBTBS])
 
* '''Operon:''' ''ydhK'' (according to [http://dbtbs.hgc.jp/COG/prom/ydhK.html DBTBS])
  
* '''[[Sigma factor]]:''' [[SigB]] {{PubMed|15805528,10482513}}  
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhK_624492_625109_1 ydhK] {{PubMed|22383849}}
 +
 
 +
* '''Sigma factor:''' [[SigB]] {{PubMed|15805528,10482513}}  
  
 
* '''Regulation:'''  induced by stress ([[SigB]]) {{PubMed|15805528,10482513}}
 
* '''Regulation:'''  induced by stress ([[SigB]]) {{PubMed|15805528,10482513}}
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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
* '''Additional information:'''  
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* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 15:12, 12 April 2012

  • Description: general stress protein, survival of ethanol stress

Gene name ydhK
Synonyms
Essential no
Product unknown
Function survival of ethanol stress
MW, pI 22 kDa, 7.413
Gene length, protein length 615 bp, 205 aa
Immediate neighbours ydhJ, pbuE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdhK context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

general stress proteins (controlled by SigB)

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU05790

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: ydhK (according to DBTBS)
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)

A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513] [WorldCat.org] [DOI] (P p)