Difference between revisions of "DsdA"

From SubtiWiki
Jump to: navigation, search
m (Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk)
Line 102: Line 102:
 
* '''Operon:''' ''[[yqjP]]-[[yqjQ]]-[[dsdA]]-[[coaA]]-[[yqjT]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yqjPQ-dsdA-coaA-yqjT.html DBTBS])
 
* '''Operon:''' ''[[yqjP]]-[[yqjQ]]-[[dsdA]]-[[coaA]]-[[yqjT]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yqjPQ-dsdA-coaA-yqjT.html DBTBS])
  
* '''[[Sigma factor]]:'''  
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dsdA_2469580_2470926_-1 dsdA] {{PubMed|22383849}}
 +
 
 +
* '''Sigma factor:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 10:41, 16 April 2012

  • Description: D-serine deaminase

Gene name dsdA
Synonyms yqjR
Essential no
Product D-serine deaminase
Function unknown
Metabolic function and regulation of this protein in SubtiPathways:
Coenzyme A
MW, pI 49 kDa, 5.55
Gene length, protein length 1344 bp, 448 aa
Immediate neighbours coaA, yqjQ
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
DsdA context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU23770

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: D-serine = pyruvate + NH3 (according to Swiss-Prot)
  • Protein family: DsdA subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

C Parsot
Evolution of biosynthetic pathways: a common ancestor for threonine synthase, threonine dehydratase and D-serine dehydratase.
EMBO J: 1986, 5(11);3013-9
[PubMed:3098560] [WorldCat.org] [DOI] (P p)