Difference between revisions of "Cdd"
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* '''Operon:''' ''[[cdd]]-[[era]]'' (according to [http://dbtbs.hgc.jp/COG/prom/cdd-era.html DBTBS]) | * '''Operon:''' ''[[cdd]]-[[era]]'' (according to [http://dbtbs.hgc.jp/COG/prom/cdd-era.html DBTBS]) | ||
| + | |||
| + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cdd_2610927_2611337_-1 cdd] {{PubMed|22383849}} | ||
* '''Sigma factor:''' SigA {{PubMed|6330116}}, SigB {{PubMed|6330116}} | * '''Sigma factor:''' SigA {{PubMed|6330116}}, SigB {{PubMed|6330116}} | ||
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* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Revision as of 11:32, 16 April 2012
- Description: cytidine deaminase
| Gene name | cdd |
| Synonyms | |
| Essential | no |
| Product | cytidine deaminase |
| Function | pyrimidine interconversion |
| Metabolic function and regulation of this protein in SubtiPathways: Nucleoside catabolism, Nucleotides (regulation) | |
| MW, pI | 14 kDa, 4.7 |
| Gene length, protein length | 408 bp, 136 aa |
| Immediate neighbours | era, dgkA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU25300
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Cytidine + H2O = uridine + NH3 (according to Swiss-Prot)
- Protein family: cytidine and deoxycytidylate deaminase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- UniProt: P19079
- KEGG entry: [3]
- E.C. number: 3.5.4.5
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
N Mejlhede, J F Atkins, J Neuhard
Ribosomal -1 frameshifting during decoding of Bacillus subtilis cdd occurs at the sequence CGA AAG.
J Bacteriol: 1999, 181(9);2930-7
[PubMed:10217788]
[WorldCat.org]
[DOI]
(P p)
B H Song, J Neuhard
Chromosomal location, cloning and nucleotide sequence of the Bacillus subtilis cdd gene encoding cytidine/deoxycytidine deaminase.
Mol Gen Genet: 1989, 216(2-3);462-8
[PubMed:2526291]
[WorldCat.org]
[DOI]
(P p)
P Z Wang, R H Doi
Overlapping promoters transcribed by bacillus subtilis sigma 55 and sigma 37 RNA polymerase holoenzymes during growth and stationary phases.
J Biol Chem: 1984, 259(13);8619-25
[PubMed:6330116]
[WorldCat.org]
(P p)
