Difference between revisions of "DhbE"

From SubtiWiki
Jump to: navigation, search
(Extended information on the protein)
Line 111: Line 111:
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
 +
** the amount of the mRNA is substantially decreased upon depletion of [[Rny|RNase Y]] {{PubMed|21815947}}
  
 
=Biological materials =
 
=Biological materials =
Line 134: Line 135:
 
=References=
 
=References=
 
'''Additional publications:''' {{PubMed|20817675}}
 
'''Additional publications:''' {{PubMed|20817675}}
 +
<big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
 +
<big>'''RNA processing in ''Bacillus subtilis'': identification of targets of the essential RNase Y.''' </big>
 +
<big>Mol Microbiol. 2011 81(6): 1459-1473. </big>
 +
[http://www.ncbi.nlm.nih.gov/pubmed/21815947 PubMed:21815947]
 
<pubmed>12221282,11112781,11790741,12354229, 8921902 8550523 </pubmed>
 
<pubmed>12221282,11112781,11790741,12354229, 8921902 8550523 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 14:26, 20 November 2011

  • Description: 2,3-dihydroxybenzoate-AMP ligase (enterobactin synthetase component E)

Gene name dhbE
Synonyms entE
Essential no
Product 2,3-dihydroxybenzoate-AMP ligase (enterobactin synthetase component E)
Function biosynthesis of the siderophore bacillibactin
MW, pI 59 kDa, 5.684
Gene length, protein length 1617 bp, 539 aa
Immediate neighbours dhbB, dhbC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
DhbE context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

acquisition of iron, iron metabolism

This gene is a member of the following regulons

AbrB regulon, Fur regulon

The gene

Basic information

  • Locus tag: BSU31980

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ATP-dependent AMP-binding enzyme family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1MDB (complex with DHB-adenylate), 1MDF
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • the amount of the mRNA is substantially decreased upon depletion of RNase Y PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Mohamed Marahiel, Marburg University, Germany homepage

Your additional remarks

References

Additional publications: PubMed

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 81(6): 1459-1473. 
PubMed:21815947