Difference between revisions of "LytB"

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(Extended information on the protein)
Line 36: Line 36:
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[LytR regulon]]}},
 
 
{{SubtiWiki regulon|[[SigD regulon]]}},
 
{{SubtiWiki regulon|[[SigD regulon]]}},
 
{{SubtiWiki regulon|[[SlrR regulon]]}},
 
{{SubtiWiki regulon|[[SlrR regulon]]}},
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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
** [[LytR]]: transcription repression {{PubMed|1357079,16306698}}
 
 
** [[YvrHb]]: transcription repression  {{PubMed|16306698}}  
 
** [[YvrHb]]: transcription repression  {{PubMed|16306698}}  
 
** [[SlrR]] (in complex with [[SinR]]: transcription repression  {{PubMed|20351052}}  
 
** [[SlrR]] (in complex with [[SinR]]: transcription repression  {{PubMed|20351052}}  

Revision as of 10:19, 30 October 2011

  • Description: modifier protein of major autolysin LytC

Gene name lytB
Synonyms cwbA
Essential no
Product modifier protein of major autolysin LytC
Function autolysis
MW, pI 76 kDa, 9.835
Gene length, protein length 2115 bp, 705 aa
Immediate neighbours lytC, lytA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
LytB context.gif
This image was kindly provided by SubtiList




Categories containing this gene/protein

cell wall degradation/ turnover, membrane proteins

This gene is a member of the following regulons

SigD regulon, SlrR regulon, YvrHb regulon

The gene

Basic information

  • Locus tag: BSU35630

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Yunrong Chai, Thomas Norman, Roberto Kolter, Richard Losick
An epigenetic switch governing daughter cell separation in Bacillus subtilis.
Genes Dev: 2010, 24(8);754-65
[PubMed:20351052] [WorldCat.org] [DOI] (I p)

Masakuni Serizawa, Keisuke Kodama, Hiroki Yamamoto, Kazuo Kobayashi, Naotake Ogasawara, Junichi Sekiguchi
Functional analysis of the YvrGHb two-component system of Bacillus subtilis: identification of the regulated genes by DNA microarray and northern blot analyses.
Biosci Biotechnol Biochem: 2005, 69(11);2155-69
[PubMed:16306698] [WorldCat.org] [DOI] (P p)

P Margot, V Lazarevic, D Karamata
Effect of the SinR protein on the expression of the Bacillus subtilis 168 lytABC operon.
Microb Drug Resist: 1996, 2(1);119-21
[PubMed:9158733] [WorldCat.org] [DOI] (P p)

V Lazarevic, P Margot, B Soldo, D Karamata
Sequencing and analysis of the Bacillus subtilis lytRABC divergon: a regulatory unit encompassing the structural genes of the N-acetylmuramoyl-L-alanine amidase and its modifier.
J Gen Microbiol: 1992, 138(9);1949-61
[PubMed:1357079] [WorldCat.org] [DOI] (P p)

A Kuroda, J Sekiguchi
Characterization of the Bacillus subtilis CwbA protein which stimulates cell wall lytic amidases.
FEMS Microbiol Lett: 1992, 74(1);109-13
[PubMed:1355454] [WorldCat.org] [DOI] (P p)