Difference between revisions of "BsrG"
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| − | * '''Description:''' | + | * '''Description:''' hydrophobic toxin <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || toxin |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown | + | |style="background:#ABCDEF;" align="center"|'''Function''' ||unknown |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| ''' | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|''' | + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 294 bp, 38 aa |
|- | |- | ||
| − | |style="background:# | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yolA]]'', ''[[SR4]]'' |
| + | |- | ||
| + | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein <br/>''' | ||
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:bsrG_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:bsrG_context.gif]] | ||
| Line 31: | Line 33: | ||
<br/><br/><br/><br/><br/> | <br/><br/><br/><br/><br/> | ||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| − | {{SubtiWiki category|[[ | + | {{SubtiWiki category|[[toxins, antitoxins and immunity against toxins]]}}, |
| + | {{SubtiWiki category|[[SPß prophage]]}}, | ||
| + | {{SubtiWiki category|[[membrane proteins]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| Line 50: | Line 54: | ||
* '''SubtiList entry:''' no entry | * '''SubtiList entry:''' no entry | ||
| − | * ''' | + | === Additional information=== |
| + | |||
| + | |||
| + | =The protein= | ||
| + | |||
| + | === Basic information/ Evolution === | ||
| + | |||
| + | * '''Catalyzed reaction/ biological activity:''' | ||
| + | |||
| + | * '''Protein family:''' | ||
| + | |||
| + | * '''Paralogous protein(s):''' | ||
| + | |||
| + | === Extended information on the protein === | ||
| + | |||
| + | * '''Kinetic information:''' | ||
| + | |||
| + | * '''Domains:''' | ||
| + | |||
| + | * '''Modification:''' | ||
| + | |||
| + | * '''Cofactor(s):''' | ||
| + | |||
| + | * '''Effectors of protein activity:''' | ||
| + | |||
| + | * '''[[SubtInteract|Interactions]]:''' | ||
| − | === | + | * '''[[Localization]]:''' |
| + | ** membrane protein (based on the presence of a trans-membrane domain) {{PubMed|22229825}} | ||
| + | |||
| + | === Database entries === | ||
| + | |||
| + | * '''Structure:''' | ||
| + | |||
| + | * '''UniProt:''' | ||
| + | |||
| + | * '''KEGG entry:''' | ||
| + | * '''E.C. number:''' | ||
| + | === Additional information=== | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[bsrG]]'' {{PubMed|22229825}} |
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[SigA]] {{PubMed|22229825}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** expression increases at the onset of the stationary phase {{PubMed|22229825}} | ||
| + | ** the mRNA is destabilized upon interaction with the antitoxin RNA [[SR4]] {{PubMed|22229825}} | ||
| + | ** the mRNA is degraded by [[Rnc]], [[Rny]] and [[Rnr]] {{PubMed|22229825}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** the mRNA is degraded by [[Rnc]], [[Rny]] and [[Rnr]], degradation is enhanced at higher temperature {{PubMed|22229825}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| + | ** half-life of the mRNA: 15 min {{PubMed|22229825}} | ||
=Biological materials = | =Biological materials = | ||
| Line 78: | Line 123: | ||
| − | =Labs working on this gene/ | + | =Labs working on this gene/protein= |
| − | + | [[Sabine Brantl]], Jena, Germany | |
=Your additional remarks= | =Your additional remarks= | ||
| Line 86: | Line 131: | ||
=References= | =References= | ||
| − | <pubmed>18948176, 20525796</pubmed> | + | <pubmed>18948176, 20525796 22229825</pubmed> |
| − | [[Category: | + | [[Category:Protein-coding genes]] |
Revision as of 15:33, 11 January 2012
- Description: hydrophobic toxin
| Gene name | bsrG |
| Synonyms | |
| Essential | no |
| Product | toxin |
| Function | unknown |
| MW, pI | |
| Gene length, protein length | 294 bp, 38 aa |
| Immediate neighbours | yolA, SR4 |
| Get the DNA and protein | |
| Genetic context File:BsrG context.gif This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
toxins, antitoxins and immunity against toxins, SPß prophage, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: no entry
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- membrane protein (based on the presence of a trans-membrane domain) PubMed
Database entries
- Structure:
- UniProt:
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
- half-life of the mRNA: 15 min PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
Labs working on this gene/protein
Sabine Brantl, Jena, Germany
Your additional remarks
References
