Difference between revisions of "YwcE"

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* '''Operon:''' ''ywcE'' {{PubMed|9353933}}  
 
* '''Operon:''' ''ywcE'' {{PubMed|9353933}}  
  
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|16159778}}  
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywcE_3914009_3914272_1 ywcE] {{PubMed|22383849}}
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 +
* '''Sigma factor:''' [[SigA]] {{PubMed|16159778}}  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 09:00, 17 April 2012

  • Description: holin, required for spore morphogenesis and germination

Gene name ywcE
Synonyms ipa-41r
Essential no
Product holin
Function required for spore morphogenesis and germination
MW, pI 9 kDa, 9.845
Gene length, protein length 261 bp, 87 aa
Immediate neighbours rodA, qoxD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YwcE context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

sporulation/ other, germination, membrane proteins

This gene is a member of the following regulons

AbrB regulon

The gene

Basic information

  • Locus tag: BSU38130

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ywcE family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed during the log phase (AbrB), expressed only at the onset of stationary phase PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References