Difference between revisions of "PutR"
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' transcriptional activator of the proline utilization operon ''[[putB]]-[[putC]]-[[putP]]'' <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional activator |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of proline utilization |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 5.37 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 5.37 | ||
| Line 18: | Line 18: | ||
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1233 bp, 411 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1233 bp, 411 aa | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[putP]]'', ''[[ycgQ]]'' |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB12117]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB12117]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | ||
| Line 34: | Line 34: | ||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| + | {{SubtiWiki category|[[transcription factors and their control]]}} | ||
{{SubtiWiki category|[[proteins of unknown function]]}} | {{SubtiWiki category|[[proteins of unknown function]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| + | =The [[PutR regulon]]:= | ||
| + | * ''[[putB]]-[[putC]]-[[putP]]'' | ||
=The gene= | =The gene= | ||
| Line 46: | Line 49: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| − | + | * no growth with proline as single source of carbon or nitrogen {{PubMed|21840319}} | |
=== Database entries === | === Database entries === | ||
| Line 54: | Line 57: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
| Line 127: | Line 128: | ||
=References= | =References= | ||
| − | + | <pubmed> 21840319 </pubmed> | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:46, 17 August 2011
| Gene name | ycgP |
| Synonyms | |
| Essential | no |
| Product | transcriptional activator |
| Function | regulation of proline utilization |
| MW, pI | 47 kDa, 5.37 |
| Gene length, protein length | 1233 bp, 411 aa |
| Immediate neighbours | putP, ycgQ |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
transcription factors and their control proteins of unknown function
This gene is a member of the following regulons
The PutR regulon:
The gene
Basic information
- Locus tag: BSU03230
Phenotypes of a mutant
- no growth with proline as single source of carbon or nitrogen PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: cdaR family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P94393
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Boris R Belitsky
Indirect repression by Bacillus subtilis CodY via displacement of the activator of the proline utilization operon.
J Mol Biol: 2011, 413(2);321-36
[PubMed:21840319]
[WorldCat.org]
[DOI]
(I p)
