Difference between revisions of "GerPF"

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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''[[gerPA]]-[[gerPB]]-[[gerPC]]-[[gerPD]]-[[gerPE]]-[[gerPF]]'' (according to [http://dbtbs.hgc.jp/COG/prom/gerPABCDEF.html DBTBS])
  
 
* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190}}
 
* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** expressed during sporulation in the mother cell ([[SigK]]) {{PubMed|15699190,10715007}}
 +
** subject to negative regulation by GerE {{PubMed|10715007}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
Line 118: Line 120:
 
=References=
 
=References=
  
<pubmed>10715007,, </pubmed>
+
<pubmed>10715007,15699190, </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 19:41, 18 September 2009

  • Description: probable spore germination protein

Gene name gerPF
Synonyms yisC
Essential no
Product unknown
Function germination
MW, pI 7 kDa, 3.621
Gene length, protein length 225 bp, 75 aa
Immediate neighbours yisB, gerPE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
GerPF context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU10670

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: gerPA/gerPF family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed during sporulation in the mother cell (SigK) PubMed
    • subject to negative regulation by GerE PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

J Behravan, H Chirakkal, A Masson, A Moir
Mutations in the gerP locus of Bacillus subtilis and Bacillus cereus affect access of germinants to their targets in spores.
J Bacteriol: 2000, 182(7);1987-94
[PubMed:10715007] [WorldCat.org] [DOI] (P p)