Difference between revisions of "YqaK"

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* '''Description:''' similar to phage-related protein <br/><br/>
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* '''Description:''' similar to phage-related protein, skin element <br/><br/>
  
 
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{| align="right" border="1" cellpadding="2"  
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=Expression and regulation=
 
=Expression and regulation=
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* '''Operon:'''  ''[[yqaF]]-[[yqdA]]-[[yqaG]]-[[yqaH]]-[[yqaI]]-[[yqaJ]]-[[yqaK]]-[[yqaL]]-[[yqaM]]-[[yqaN]]''  {{PubMed|20889742}}
  
* '''Operon:'''
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* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|20889742}}
 
 
* '''[[Sigma factor]]:'''  
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** not expressed during normal growth ([[SknR]])  {{PubMed|20889742}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** [[SknR]]: transcription repression  {{PubMed|20889742}}
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
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=References=
 
=References=
 
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<pubmed> 20889742 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:41, 11 October 2010

  • Description: similar to phage-related protein, skin element

Gene name yqaK
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 32 kDa, 5.076
Gene length, protein length 852 bp, 284 aa
Immediate neighbours yqaL, yqaJ
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YqaK context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU26280

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • not expressed during normal growth (SknR) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tatsu Kimura, Yukie Amaya, Kazuo Kobayashi, Naotake Ogasawara, Tsutomu Sato
Repression of sigK intervening (skin) element gene expression by the CI-like protein SknR and effect of SknR depletion on growth of Bacillus subtilis cells.
J Bacteriol: 2010, 192(23);6209-16
[PubMed:20889742] [WorldCat.org] [DOI] (I p)