ydjM

168

member of the walR regulon, putative cell wall hydrolase (N-acetylglucosamidase)

Locus: BSU_06250

Molecular weight: 13.04 kDa

Isoelectric point: 10.57

Protein length: 123 aa

Gene length: 372 bp

Function: may be involved in cell wall metabolism (walR regulon)

Product: unknown

Essential: no

Synonyms: ydjM, yzvA

Genomic Context

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List of homologs in different organisms

Gene

Coordinates: 679,390  679,761

The protein

Structure

• P40775 (AlphaFold)

Localization

• extracellular (signal peptide) PubMed

Expression and Regulation

Operons

• Genes: ydjM

  Description: PubMed

  Regulation

  • activated by WalR PubMed

  Regulatory mechanism

  • WalR: activation, PubMed, in walR regulon
  • PhoP: activation, PubMed, in phoP regulon

  Additional information

  • the terminator is NusA-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]

• Genes: ydjM-ydjN

  Description: PubMed

  Regulation

  • activated by WalR PubMed

  Regulatory mechanism

  • WalR: activation, PubMed, in walR regulon
  • PhoP: activation, PubMed, in phoP regulon

  Additional information

  • the terminator is NusA-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]

Biological materials

Mutant

• MGNA-C220 (ydjM::erm), available at the NBRP B. subtilis, Japan
• BKE06250 (ydjM::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT,  downstream forward: _UP4_TAATGTACATATATAATCTG
• BKK06250 (ydjM::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT,  downstream forward: _UP4_TAATGTACATATATAATCTG

References

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