yndD

168

part of the YndD-YndE-YndF germinant receptor of unknown specificity

Locus: BSU_17750

Molecular weight: 57.84 kDa

Isoelectric point: 9.23

Protein length: 520 aa

Gene length: 1563 bp

Function: Germination

Product: part of the YndD-YndE-YndF germinant receptor

Essential: no

Synonyms: yndD

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG5901 (Galperin et al., 2021)

Gene

Coordinates: 1,907,494  1,909,056

The protein

Protein family

• GerABKA family (according to UniProt)

Structure

• 6O59 (PDB) (from B. megaterium, corresponds to aa 37 ... 298, 37.4% identity) PubMed
• O31808 (AlphaFold)

Paralogous protein(s)

• GerKA, GerAA, GerBA, YfkQ

Localization

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• Genes: yndD-yndE-yndF

  Description: PubMed

  Regulation

  • expressed late during sporulation in the forespore (SigG) PubMed

  Sigma factors

  • SigG: sigma factor, PubMed, in sigG regulon

Biological materials

Mutant

• MGNA-A022 (yndD::erm), available at the NBRP B. subtilis, Japan
• BKE17750 (yndD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTGCACCTTCTTATACAT,  downstream forward: _UP4_TGATGAACTCGACAGGATGG
• BKK17750 (yndD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTGCACCTTCTTATACAT,  downstream forward: _UP4_TGATGAACTCGACAGGATGG

References

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