xkdA

168

PBSX prophage

Locus: BSU_12500

Molecular weight: 23.38 kDa

Isoelectric point: 6.69

Protein length: 198 aa

Gene length: 597 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: xkdA, ykxA

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG2856 (Galperin et al., 2021)

Gene

Coordinates: 1,320,570  1,321,166

The protein

Structure

• P39780 (AlphaFold)

Expression and Regulation

Operons

• Genes: xkdA

  Description: PubMed

  Regulation

  • induced upon DNA damage (LexA) PubMed

  Regulatory mechanism

  • LexA: repression, PubMed, in lexA regulon

  Sigma factors

  • SigD: sigma factor, PubMed, in sigD regulon

Biological materials

Mutant

• BKE12500 (xkdA::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CAATTGAATACTCCCTTTCG,  downstream forward: _UP4_TGATCAAATACGGGCTGAGG
• BKK12500 (xkdA::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CAATTGAATACTCCCTTTCG,  downstream forward: _UP4_TGATCAAATACGGGCTGAGG

References

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