ydjP

168

similar to chloroperoxydase

Locus: BSU_06280

Molecular weight: 30.36 kDa

Isoelectric point: 4.62

Protein length: 271 aa

Gene length: 816 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: ydjP

Genomic Context

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List of homologs in different organisms, belongs to COG0596 (Galperin et al., 2021)

Gene

Coordinates: 681,547  682,362

The protein

Protein family

• AB hydrolase superfamily (according to UniProt)

Domains

• AB hydrolase-1 domain (aa 23-257) (according to InterPro)

Structure

• 4RNC (PDB) (from Rhodococcus sp., 28%(low identity!!!)
• O34592 (AlphaFold)

Paralogous protein(s)

• YvaM, (39,4%)

Expression and Regulation

Operons

• Genes: yeaA-ydjP-ydjO

  Description: PubMed

  Regulation

  • induced by cold shock PubMed

  Sigma factors

  • SigW: sigma factor, PubMed, in sigW regulon
  • SigE: sigma factor, PubMed, in sigE regulon

Biological materials

Mutant

• MGNA-C223 (ydjP::erm), available at the NBRP B. subtilis, Japan
• BKE06280 (ydjP::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGTTTCTCCTCCTTTAGT,  downstream forward: _UP4_TAAAGAAAAAGGAATTAGGA
• BKK06280 (ydjP::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGTTTCTCCTCCTTTAGT,  downstream forward: _UP4_TAAAGAAAAAGGAATTAGGA

References

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