yesW
168

rhamnogalacturonan lyase, generates oligosaccharides

Locus

BSU_07050

Molecular weight

67.41 kDa

Isoelectric point

5.97

Protein length

620 aaSequenceBlast

Gene length

1863 bpSequenceBlast

Function

utilization of rhamnogalacturonan

Product

rhamnogalacturonan lyase, generates oligosaccharides

Essential

E.C.

null

Synonyms

yesW

Outlinks

BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Hide small RNAsZoom:

Categories containing this gene/protein

List of homologs in different organisms

This gene is a member of the following regulons

Gene

Coordinates

770,234 772,096

The protein

Catalyzed reaction/ biological activity

Endotype eliminative cleavage of L-alpha-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronic acid bonds of rhamnogalacturonan I domains in ramified hairy regions of pectin leaving L-rhamnopyranose at the reducing end and 4-deoxy-4,5-unsaturated D-galactopyranosyluronic acid at the non-reducing end (according to UniPort)

Protein family

polysaccharide lyase 11 family (with YesX, according to UniProt)

Domains

Rhamnose is bound near the active site, but there are also additional rhamnose-binding sites far away from the active site, which possibly function as a carbohydrate-binding region (according to UniProt)

Structure

2Z8R (PDB)

O31526 (AlphaFold)

Paralogous protein(s)

YesX

Localization

secreted (according to Swiss-Prot)

Expression and Regulation

Operons

Genes

yesW-yesX-yesY-yesZ

Description