ydaB

168

similar to acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)

Locus: BSU_04170

Molecular weight: 51.07 kDa

Isoelectric point: 4.85

Protein length: 503 aa

Gene length: 1512 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: ydaB

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG0318 (Galperin et al., 2021)

Gene

Coordinates: 469,426  470,937

The protein

Protein family

• ATP-dependent AMP-binding enzyme family (according to UniProt)

Structure

• 3R44 (PDB) (from Mycobacterium tuberculosis, 33% identity) PubMed
• P96575 (AlphaFold)

Expression and Regulation

Operons

• Genes: ydaB

  Description: PubMed

  Additional information

  • the mRNA is substantially stabilized upon depletion of RNase Y (the half-life of the mRNA increases from 2 to 80 min) PubMed

Biological materials

Mutant

• BKE04170 (ydaB::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATATCGTCATCTCCTATAT,  downstream forward: _UP4_TCATAAAAGAAGAAGCCCGT
• BKK04170 (ydaB::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATATCGTCATCTCCTATAT,  downstream forward: _UP4_TCATAAAAGAAGAAGCCCGT

References

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