Difference between revisions of "Genome-wide analyses"
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==The genome sequence== | ==The genome sequence== | ||
| − | <pubmed> 9384377 19383706 18723616 21527469</pubmed> | + | <pubmed> 9384377 19383706 18723616 21527469 24994804 27469946 |
| + | 18670626</pubmed> | ||
==Transcript analysis== | ==Transcript analysis== | ||
| − | + | <pubmed>19682248, 22087258 22383849 21266987,21954440 25367190 </pubmed> | |
| − | <pubmed>19682248, | + | |
| + | ===[http://bacillus-subtilis168.appspot.com/ A database for the time-resolved expression of all ''B. subtilis'' genes]=== | ||
==Proteome analysis== | ==Proteome analysis== | ||
| − | + | <pubmed> 18763711 23468065,21266987 17981983 17726680 17055787 16552027 15378759 15187182 17218307 21710564 24696501 24878497 </pubmed> | |
| − | <pubmed> 18763711 | ||
==See also: [[Additional genome projects for Bacillus subtilis and other Bacilli]] == | ==See also: [[Additional genome projects for Bacillus subtilis and other Bacilli]] == | ||
Latest revision as of 14:05, 4 August 2016
Contents
The genome sequence
Transcript analysis
Wout Overkamp, Onur Ercan, Martijn Herber, Antonius J A van Maris, Michiel Kleerebezem, Oscar P Kuipers
Physiological and cell morphology adaptation of Bacillus subtilis at near-zero specific growth rates: a transcriptome analysis.
Environ Microbiol: 2015, 17(2);346-63
[PubMed:25367190]
[WorldCat.org]
[DOI]
(I p)
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
Evert-Jan Blom, Anja N J A Ridder, Andrzej T Lulko, Jos B T M Roerdink, Oscar P Kuipers
Time-resolved transcriptomics and bioinformatic analyses reveal intrinsic stress responses during batch culture of Bacillus subtilis.
PLoS One: 2011, 6(11);e27160
[PubMed:22087258]
[WorldCat.org]
[DOI]
(I p)
Kai Song
Recognition of prokaryotic promoters based on a novel variable-window Z-curve method.
Nucleic Acids Res: 2012, 40(3);963-71
[PubMed:21954440]
[WorldCat.org]
[DOI]
(I p)
Andreas Otto, Jörg Bernhardt, Hanna Meyer, Marc Schaffer, Florian-A Herbst, Juliane Siebourg, Ulrike Mäder, Michael Lalk, Michael Hecker, Dörte Becher
Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.
Nat Commun: 2010, 1;137
[PubMed:21266987]
[WorldCat.org]
[DOI]
(I p)
Simon Rasmussen, Henrik Bjørn Nielsen, Hanne Jarmer
The transcriptionally active regions in the genome of Bacillus subtilis.
Mol Microbiol: 2009, 73(6);1043-57
[PubMed:19682248]
[WorldCat.org]
[DOI]
(I p)
A database for the time-resolved expression of all B. subtilis genes
Proteome analysis
