Difference between revisions of "YcbC"

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=== Basic information ===
 
=== Basic information ===
  
* '''Coordinates:'''
+
* '''Locus tag:'''
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===

Revision as of 15:58, 2 June 2009

  • Description: 5-dehydro-4-deoxyglucarate dehydratase

Gene name ycbC
Synonyms
Essential no
Product 5-dehydro-4-deoxyglucarate dehydratase
Function utilization of D-glucarate/galactarate
MW, pI 33 kDa, 5.375
Gene length, protein length 924 bp, 308 aa
Immediate neighbours glnL, ycbD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YcbC context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 5-dehydro-4-deoxy-D-glucarate = 2,5-dioxopentanoate + H2O + CO2 (according to Swiss-Prot)
  • Protein family: DHDPS family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:

Additional information

Expression and regulation

  • Regulation: induced by D-glucarate/galactarate (YcbG) PubMed
  • Regulatory mechanism: YcbG: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed