Difference between revisions of "CwlK"

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(Labs working on this gene/protein)
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycdC]]'', ''[[rapJ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycdC]]'', ''[[rapJ]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ycdD_nucleotide.txt    Gene sequence      (+200bp)  ]'''
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12075&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ycdD_protein.txt Protein sequence]'''
 
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ycdD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ycdD_context.gif]]

Revision as of 04:47, 17 April 2009

  • Description: similar to L-alanoyl-D-glutamate peptidase

Gene name cwlK
Synonyms ycdD
Essential no
Product unknown
Function cell wall turnover
MW, pI 18 kDa, 5.66
Gene length, protein length 501 bp, 167 aa
Immediate neighbours ycdC, rapJ
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YcdD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Ciaran Condon, IBPC, Paris, France Homepage

Your additional remarks

References

  1. Fukushima T, Yao Y, Kitajima T, Yamamoto H, Sekiguchi J. (2007) Characterization of new L,D-endopeptidase gene product CwlK (previous YcdD) that hydrolyzes peptidoglycan in Bacillus subtilis. Mol Genet Genomics. Oct;278(4): 371-83. PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed