Difference between revisions of "Stusti 2018"
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= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas = | = Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas = | ||
| − | == What makes RNA such a special molecule – specific chemical and structural features of RNA == | + | == What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl == |
<pubmed> 21930584</pubmed> | <pubmed> 21930584</pubmed> | ||
| − | == RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair == | + | == RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner == |
<pubmed> 24219496 8156586 28979293 26109351</pubmed> | <pubmed> 24219496 8156586 28979293 26109351</pubmed> | ||
| − | == Ribozymes (catalytically active RNAs | + | == Ribozymes (catalytically active RNAs: Christian Thielscher) == |
| − | <pubmed> 21930582</pubmed> | + | <pubmed> 21930582 22454536 14730013 10554775 21930585 6297745</pubmed> |
| − | == The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology == | + | == The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz == |
<pubmed> 18292779 21930591 25500179</pubmed> | <pubmed> 18292779 21930591 25500179</pubmed> | ||
| − | == The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity == | + | == The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider == |
<pubmed> 24452469,26682498 25798239 </pubmed> | <pubmed> 24452469,26682498 25798239 </pubmed> | ||
| − | + | == Riboregulation and virulence, targeting by antibiotics: Theresia Eisele == | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | == Riboregulation and virulence, targeting by antibiotics == | ||
<pubmed>27651123 26416753 | <pubmed>27651123 26416753 | ||
27120414 27672192 28434876 28529506 28886688</pubmed> | 27120414 27672192 28434876 28529506 28886688</pubmed> | ||
| − | == | + | == Riboswitch modeling: Mark Sinzger == |
| − | <pubmed> | + | <pubmed>19381267 28591515 27378291</pubmed> |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | == The RNA world and evolution == | + | == The RNA world and evolution: Roman Doll == |
<pubmed> 25109990 25385129 25734234 25739364 26439358 17540026 29031737 28657884 19117371</pubmed> | <pubmed> 25109990 25385129 25734234 25739364 26439358 17540026 29031737 28657884 19117371</pubmed> | ||
| − | == RNA modification == | + | == RNA modification: Jan Michel Göring == |
<pubmed> 26189113 26832457 27375676 | <pubmed> 26189113 26832457 27375676 | ||
28264529 28624569</pubmed> | 28264529 28624569</pubmed> | ||
| − | == RNA degradation/processing == | + | == RNA degradation/processing: Lena Kricsfalussy-Hrabar == |
<pubmed> 26096689 28202538 19239894 </pubmed> | <pubmed> 26096689 28202538 19239894 </pubmed> | ||
| − | == Regulation by non-coding RNA == | + | == Regulation by non-coding RNA: Maxin Drömer == |
<pubmed> 18981470 24667238 </pubmed> | <pubmed> 18981470 24667238 </pubmed> | ||
| − | == RNA dependent DNA Polymerases - from telomerase to retroviruses== | + | == RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel== |
<pubmed> 18972389 26830230 28141967 </pubmed> | <pubmed> 18972389 26830230 28141967 </pubmed> | ||
| − | + | == CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier == | |
| − | |||
| − | |||
| − | == CRISPR/Cas: Science – the bacterial “immune” system == | ||
<pubmed> 29358495 29169146 28375731</pubmed> | <pubmed> 29358495 29169146 28375731</pubmed> | ||
| − | == CRISPR/Cas: Application and groundbreaking perspectives == | + | == CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton == |
<pubmed> 26771484 </pubmed> | <pubmed> 26771484 </pubmed> | ||
| − | + | == Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol == | |
| − | |||
| − | |||
| − | == Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer == | ||
<pubmed> 22016848 26186290 21957054 23166520 21930591</pubmed> | <pubmed> 22016848 26186290 21957054 23166520 21930591</pubmed> | ||
| Line 71: | Line 54: | ||
== Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways == | == Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways == | ||
<pubmed> 17627883 19943183 </pubmed> | <pubmed> 17627883 19943183 </pubmed> | ||
| + | |||
| + | == RNA-based second messengers: Jörg Stülke == | ||
| + | <pubmed> 28420751 25616065 25682701 25869574 26280533</pubmed> | ||
| + | |||
| + | == Riboswitches: Jörg Stülke == | ||
| + | <pubmed> 27607554 26655897 28121427 29618088 25794618 25794617 25848023 24769284 25571850 25964329 25959893 24816551 25583497 26118534 26494285 28206750 28375729 28396576 28541183 28455443 29537923 27798597 29135333 29420816 28611182</pubmed> | ||
| + | |||
| + | == RNA dependent RNA Polymerases – the RNA replicase == | ||
| + | <pubmed> 29439438 18268843 9878607 </pubmed> | ||
| + | |||
| + | == The mysterious function and role of 6S-RNA and pRNA in bacteria == | ||
| + | <pubmed> 24786589 17383220 24742053 23457253</pubmed> | ||
| + | |||
| + | == RNA thermometers== | ||
| + | <pubmed>25477380 27060146 </pubmed> | ||
Latest revision as of 13:42, 27 July 2018
Contents
- 1 Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas
- 1.1 What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl
- 1.2 RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner
- 1.3 Ribozymes (catalytically active RNAs: Christian Thielscher)
- 1.4 The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz
- 1.5 The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider
- 1.6 Riboregulation and virulence, targeting by antibiotics: Theresia Eisele
- 1.7 Riboswitch modeling: Mark Sinzger
- 1.8 The RNA world and evolution: Roman Doll
- 1.9 RNA modification: Jan Michel Göring
- 1.10 RNA degradation/processing: Lena Kricsfalussy-Hrabar
- 1.11 Regulation by non-coding RNA: Maxin Drömer
- 1.12 RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel
- 1.13 CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier
- 1.14 CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton
- 1.15 Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol
- 1.16 Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)
- 1.17 Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways
- 1.18 RNA-based second messengers: Jörg Stülke
- 1.19 Riboswitches: Jörg Stülke
- 1.20 RNA dependent RNA Polymerases – the RNA replicase
- 1.21 The mysterious function and role of 6S-RNA and pRNA in bacteria
- 1.22 RNA thermometers
Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas
What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl
David A Hiller, Scott A Strobel
The chemical versatility of RNA.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2929-35
[PubMed:21930584]
[WorldCat.org]
[DOI]
(I p)
RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner
Ribozymes (catalytically active RNAs: Christian Thielscher)
Christian Hammann, Andrej Luptak, Jonathan Perreault, Marcos de la Peña
The ubiquitous hammerhead ribozyme.
RNA: 2012, 18(5);871-85
[PubMed:22454536]
[WorldCat.org]
[DOI]
(I p)
Sidney Altman
Ribonuclease P.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2936-41
[PubMed:21930585]
[WorldCat.org]
[DOI]
(I p)
David M J Lilley
Mechanisms of RNA catalysis.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2910-7
[PubMed:21930582]
[WorldCat.org]
[DOI]
(I p)
David M J Lilley
The Varkud satellite ribozyme.
RNA: 2004, 10(2);151-8
[PubMed:14730013]
[WorldCat.org]
[DOI]
(P p)
R Shippy, R Lockner, M Farnsworth, A Hampel
The hairpin ribozyme. Discovery, mechanism, and development for gene therapy.
Mol Biotechnol: 1999, 12(1);117-29
[PubMed:10554775]
[WorldCat.org]
[DOI]
(P p)
K Kruger, P J Grabowski, A J Zaug, J Sands, D E Gottschling, T R Cech
Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.
Cell: 1982, 31(1);147-57
[PubMed:6297745]
[WorldCat.org]
[DOI]
(P p)
The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz
The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider
Panagiotis Papasaikas, Juan Valcárcel
The Spliceosome: The Ultimate RNA Chaperone and Sculptor.
Trends Biochem Sci: 2016, 41(1);33-45
[PubMed:26682498]
[WorldCat.org]
[DOI]
(I p)
Yan Wang, Jing Liu, B O Huang, Yan-Mei Xu, Jing Li, Lin-Feng Huang, Jin Lin, Jing Zhang, Qing-Hua Min, Wei-Ming Yang, Xiao-Zhong Wang
Mechanism of alternative splicing and its regulation.
Biomed Rep: 2015, 3(2);152-158
[PubMed:25798239]
[WorldCat.org]
[DOI]
(P p)
A Gregory Matera, Zefeng Wang
A day in the life of the spliceosome.
Nat Rev Mol Cell Biol: 2014, 15(2);108-21
[PubMed:24452469]
[WorldCat.org]
[DOI]
(I p)
Riboregulation and virulence, targeting by antibiotics: Theresia Eisele
Riboswitch modeling: Mark Sinzger
The RNA world and evolution: Roman Doll
RNA modification: Jan Michel Göring
Baixing Wu, Li Li, Ying Huang, Jinbiao Ma, Jinrong Min
##Title##
Curr Opin Struct Biol: 2017, 47;67-76
[PubMed:28624569]
[WorldCat.org]
[DOI]
(I p)
Hiroyuki Hori
Transfer RNA methyltransferases with a SpoU-TrmD (SPOUT) fold and their modified nucleosides in tRNA.
Biomolecules: 2017, 7(1);
[PubMed:28264529]
[WorldCat.org]
[DOI]
(I e)
Ajay K Rana, Serge Ankri
Reviving the RNA World: An Insight into the Appearance of RNA Methyltransferases.
Front Genet: 2016, 7;99
[PubMed:27375676]
[WorldCat.org]
[DOI]
(P e)
Marcus Fislage, Lina Wauters, Wim Versées
Invited review: MnmE, a GTPase that drives a complex tRNA modification reaction.
Biopolymers: 2016, 105(8);568-79
[PubMed:26832457]
[WorldCat.org]
[DOI]
(I p)
Clément Dégut, Luc Ponchon, Marcia Folly-Klan, Pierre Barraud, Carine Tisné
The m1A(58) modification in eubacterial tRNA: An overview of tRNA recognition and mechanism of catalysis by TrmI.
Biophys Chem: 2016, 210;27-34
[PubMed:26189113]
[WorldCat.org]
[DOI]
(I p)
RNA degradation/processing: Lena Kricsfalussy-Hrabar
Regulation by non-coding RNA: Maxin Drömer
Yvonne Göpel, Muna A Khan, Boris Görke
Ménage à trois: post-transcriptional control of the key enzyme for cell envelope synthesis by a base-pairing small RNA, an RNase adaptor protein, and a small RNA mimic.
RNA Biol: 2014, 11(5);433-42
[PubMed:24667238]
[WorldCat.org]
[DOI]
(I p)
Boris Görke, Jörg Vogel
Noncoding RNA control of the making and breaking of sugars.
Genes Dev: 2008, 22(21);2914-25
[PubMed:18981470]
[WorldCat.org]
[DOI]
(P p)
RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel
CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier
Yoshizumi Ishino, Mart Krupovic, Patrick Forterre
History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology.
J Bacteriol: 2018, 200(7);
[PubMed:29358495]
[WorldCat.org]
[DOI]
(I e)
Lina M Leon, Senén D Mendoza, Joseph Bondy-Denomy
How bacteria control the CRISPR-Cas arsenal.
Curr Opin Microbiol: 2018, 42;87-95
[PubMed:29169146]
[WorldCat.org]
[DOI]
(I p)
Fuguo Jiang, Jennifer A Doudna
CRISPR-Cas9 Structures and Mechanisms.
Annu Rev Biophys: 2017, 46;505-529
[PubMed:28375731]
[WorldCat.org]
[DOI]
(I p)
CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton
Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol
Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)
Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways
RNA-based second messengers: Jörg Stülke
Riboswitches: Jörg Stülke
RNA dependent RNA Polymerases – the RNA replicase
The mysterious function and role of 6S-RNA and pRNA in bacteria
RNA thermometers
