Difference between revisions of "SigD regulon"
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= Genes in this [[regulon]] = | = Genes in this [[regulon]] = | ||
| − | * ''[[ | + | * as-''[[gdpP]]'' |
| − | |||
| − | |||
| − | |||
* ''[[cheV]]'' | * ''[[cheV]]'' | ||
| − | |||
| − | |||
* ''[[cwlQ]]'' | * ''[[cwlQ]]'' | ||
| + | * ''[[cwlS]]'' | ||
* ''[[degR]]'' | * ''[[degR]]'' | ||
* ''[[dltA]]'' | * ''[[dltA]]'' | ||
| Line 19: | Line 15: | ||
* ''[[dltE]]'' | * ''[[dltE]]'' | ||
* ''[[epr]]'' | * ''[[epr]]'' | ||
| − | * ''[[flgB]] | + | * ''[[flgB]]-[[flgC]]-[[fliE]]-[[fliF]]-[[fliG]]-[[fliH]]-[[fliI]]-[[fliJ]]-[[ylxF]]-[[fliK]]-[[flgD]]-[[flgE]]-[[fliL]]-[[fliM]]-[[fliY]]-[[cheY]]-[[fliZ]]-[[fliP]]-[[fliQ]]-[[fliR]]-[[flhB]]-[[flhA]]-[[flhF]]-[[flhG]]-[[cheB]]-[[cheA]]-[[cheW]]-[[cheC]]-[[cheD]]-[[sigD]]-[[swrB]]'' |
| − | |||
| − | |||
* ''[[flgK]]'' | * ''[[flgK]]'' | ||
* ''[[flgL]]'' | * ''[[flgL]]'' | ||
* ''[[flgM]]'' | * ''[[flgM]]'' | ||
| − | * ''[[ | + | * ''[[flgN]]'' |
| − | |||
| − | |||
* ''[[flhO]]'' | * ''[[flhO]]'' | ||
* ''[[flhP]]'' | * ''[[flhP]]'' | ||
* ''[[fliD]]'' | * ''[[fliD]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[fliS]]'' | * ''[[fliS]]'' | ||
* ''[[fliT]]'' | * ''[[fliT]]'' | ||
| − | |||
| − | |||
* ''[[hag]]'' | * ''[[hag]]'' | ||
* ''[[hemAT]]'' | * ''[[hemAT]]'' | ||
| Line 61: | Line 39: | ||
* ''[[nfrA]]'' | * ''[[nfrA]]'' | ||
* ''[[pgdS]]'' | * ''[[pgdS]]'' | ||
| + | * ''[[rnaC]]'' | ||
* ''[[sigA]]'' | * ''[[sigA]]'' | ||
| − | * ''[[ | + | * ''[[sivC]]'' |
| − | * ''[[ | + | * ''[[swrAA]]-[[minJ]]'' |
* ''[[tlpA]]'' | * ''[[tlpA]]'' | ||
* ''[[tlpB]]'' | * ''[[tlpB]]'' | ||
| Line 73: | Line 52: | ||
* ''[[yjcQ]]'' | * ''[[yjcQ]]'' | ||
* ''[[yjfB]]'' | * ''[[yjfB]]'' | ||
| − | + | ||
| − | |||
| − | |||
| − | |||
* ''[[yoaH]]'' | * ''[[yoaH]]'' | ||
* ''[[yscB]]'' | * ''[[yscB]]'' | ||
* ''[[yvyC]]'' | * ''[[yvyC]]'' | ||
* ''[[yvyF]]'' | * ''[[yvyF]]'' | ||
| − | + | ||
* ''[[ywcH]]'' | * ''[[ywcH]]'' | ||
* ''[[yxkC]]'' | * ''[[yxkC]]'' | ||
| + | ==newly added== | ||
| + | * [[yabN]]-[[yabO]] | ||
| + | * [[yjcM]] | ||
| + | * [[xkdA]] | ||
| + | * [[dgcW]] | ||
| + | * [[rnhB]]-[[ylqG]]-[[ylqH]] | ||
| + | * [[ylzI]] | ||
| + | * [[yoyG]] | ||
| + | * [[cgeD]]-[[cgeE]] | ||
| + | * [[yqaR]] | ||
| + | * [[yqaS]] | ||
| + | * [[ytlR]] | ||
| + | * [[yvaQ]] | ||
| + | * [[yvbI]] | ||
| + | * [[fliW]] | ||
| + | * [[smiA]] | ||
| + | * [[csrA]] | ||
| + | * [[yviE]] | ||
| + | * [[yxkH]] | ||
= Comments = | = Comments = | ||
| − | + | * the [[SigD]] regulon is strongly overexpressed in a ''[[ymdB]]'' mutant (loss of bistable gene expression) {{PubMed|21856853}} | |
| + | * expression of the [[SigD]] regulon is reduced upon overexpression of [[SlrA]], this can be suppressed by mutations in ''[[remA]]'', ''[[remB]]'', ''[[sinR]]'', or ''[[slrR]]'' {{PubMed|22329926}} | ||
| + | * expression of the [[SigD]] regulon is reduced in ''[[pnpA]]'' mutants due to reduced ''[[sigD]]'' expression {{PubMed|25099370}} | ||
| + | * the [[SigD regulon]] is not expressed in a ''[[rpsU]]'' mutant, this can be suppressed by inactivation of ''[[remA]]'' {{PubMed|25035996}} | ||
= Important publications on the [[SigD]] [[regulon]] = | = Important publications on the [[SigD]] [[regulon]] = | ||
| − | + | <pubmed>15033535,2111808,22329926 21856853 25035996 26577401</pubmed> | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | <pubmed>15033535,2111808,</pubmed> | ||
=Back to [[regulons]]= | =Back to [[regulons]]= | ||
Latest revision as of 15:41, 29 December 2015
| Regulator | |
Contents
Genes in this regulon
- as-gdpP
- cheV
- cwlQ
- cwlS
- degR
- dltA
- dltB
- dltC
- dltD
- dltE
- epr
- flgB-flgC-fliE-fliF-fliG-fliH-fliI-fliJ-ylxF-fliK-flgD-flgE-fliL-fliM-fliY-cheY-fliZ-fliP-fliQ-fliR-flhB-flhA-flhF-flhG-cheB-cheA-cheW-cheC-cheD-sigD-swrB
- flgK
- flgL
- flgM
- flgN
- flhO
- flhP
- fliD
- fliS
- fliT
- hag
- hemAT
- lytA
- lytB
- lytC
- lytD
- lytF
- mcpA
- mcpB
- mcpC
- motA
- motB
- nfrA
- pgdS
- rnaC
- sigA
- sivC
- swrAA-minJ
- tlpA
- tlpB
- tlpC
- ybdO
- yfmS
- yfmT
- yjcP
- yjcQ
- yjfB
newly added
- yabN-yabO
- yjcM
- xkdA
- dgcW
- rnhB-ylqG-ylqH
- ylzI
- yoyG
- cgeD-cgeE
- yqaR
- yqaS
- ytlR
- yvaQ
- yvbI
- fliW
- smiA
- csrA
- yviE
- yxkH
Comments
- the SigD regulon is strongly overexpressed in a ymdB mutant (loss of bistable gene expression) PubMed
- expression of the SigD regulon is reduced upon overexpression of SlrA, this can be suppressed by mutations in remA, remB, sinR, or slrR PubMed
- expression of the SigD regulon is reduced in pnpA mutants due to reduced sigD expression PubMed
- the SigD regulon is not expressed in a rpsU mutant, this can be suppressed by inactivation of remA PubMed
Important publications on the SigD regulon
