yodF

168

similar to amino acid permease

Locus: BSU_19580

Molecular weight: 53.60 kDa

Isoelectric point: 9.68

Protein length: 496 aa

Gene length: 1491 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: yodF

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG0591 (Galperin et al., 2021)

Gene

Coordinates: 2,130,377  2,131,867

The protein

Catalyzed reaction/ biological activity

• in some database, the protein is annotated as being similar to proline permease, however, it is not involved in proline transport  PubMed

Protein family

• sodium:solute symporter (SSF) (TC 2.A.21) family (according to UniProt)

Structure

• O34745 (AlphaFold)

Paralogous protein(s)

• YhjB

Localization

• membrane PubMed

Expression and Regulation

Operons

• Genes: yoyD-yodF

  Description: PubMed

  Regulation

  • expression during spore germination is strongly reduced under conditions of osmotic stress PubMed

  Regulatory mechanism

  • TnrA: repression, PubMed, in tnrA regulon

Biological materials

Mutant

• MGNA-B437 (yodF::erm), available at the NBRP B. subtilis, Japan
• GP1887 ΔyodF::kan, available in Jörg Stülke's lab PubMed
• GP3569 ΔyodF::phleo, available in Jörg Stülke's lab
• GP3570 ΔyodF::cat, available in Jörg Stülke's lab
• BKE19580 (yodF::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_AAGTGCAGTCAGATTCCCTT,  downstream forward: _UP4_TAAAAAAACCATACGCGGCA
• BKK19580 (yodF::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_AAGTGCAGTCAGATTCCCTT,  downstream forward: _UP4_TAAAAAAACCATACGCGGCA

References

Loading