Difference between revisions of "Sda"
| Line 47: | Line 47: | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| + | {{SubtiWiki regulon|[[DnaA regulon]]}}, | ||
{{SubtiWiki regulon|[[LexA regulon]]}} | {{SubtiWiki regulon|[[LexA regulon]]}} | ||
| Line 92: | Line 93: | ||
* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
** [[KinB]]-[[Sda]] {{PubMed|19465772}} | ** [[KinB]]-[[Sda]] {{PubMed|19465772}} | ||
| − | ** | + | ** [[KinA]]-[[Sda]] {{PubMed|15023339}} |
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
| Line 108: | Line 109: | ||
=== Additional information=== | === Additional information=== | ||
| − | + | * [[Sda]] is rapidly degraded by the [[ClpP|ClpP/X]] system because of some uncharged residues at its C-terminus {{PubMed|16796683}} | |
| − | Sda is rapidly | ||
=Expression and regulation= | =Expression and regulation= | ||
| Line 123: | Line 123: | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | ** | + | ** [[DnaA]]: transcription activation under replication stress {{PubMed|17932079}} |
** [[LexA]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16267290 PubMed] | ** [[LexA]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16267290 PubMed] | ||
| Line 155: | Line 155: | ||
<pubmed> 22933559</pubmed> | <pubmed> 22933559</pubmed> | ||
== Original publications == | == Original publications == | ||
| − | <pubmed>11207367, 16267290, 19465772, 15023339 16796683 19684115 17932079 17350039 19101565 20525796</pubmed> | + | <pubmed>11207367, 16267290, 19465772, 15023339 16796683 19684115 17932079 17350039 19101565 20525796 26020636</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 10:20, 1 June 2015
- Description: developmental checkpoint protein, inhibits the autokinase activity of KinA and KinB, control of the phosphorelay
| Gene name | sda |
| Synonyms | |
| Essential | no |
| Product | developmental checkpoint protein |
| Function | mediates a developmental checkpoint coupling initiation of sporulation (phosphorylation of Spo0A) to the function of replication initiation proteins |
| Gene expression levels in SubtiExpress: sda | |
| Interactions involving this protein in SubtInteract: Sda | |
| Function and regulation of this protein in SubtiPathways: sda | |
| MW, pI | 6 kDa, 5.605 |
| Gene length, protein length | 156 bp, 52 aa |
| Immediate neighbours | yloV, yqeF |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU25690
Phenotypes of a mutant
- sporulates at a higher frequency
- will sporulate in the presence of replication stress
Database entries
- BsubCyc: BSU25690
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Sda is a checkpoint protein that is upregulated in response to replication stress PubMed. Sda inhibits the autokinase activity of KinA (and likely KinB as well). This in its turn results in reduced levels of Spo0A~P. Thus, replication stressed cells will not initiate sporulation.
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU25690
- UniProt: Q7WY62
- KEGG entry: [3]
- E.C. number:
Additional information
- Sda is rapidly degraded by the ClpP/X system because of some uncharged residues at its C-terminus PubMed
Expression and regulation
- Regulatory mechanism:
- Additional information:
- Sda is rapidly turned over by the ClpP/X system because of some uncharged residues at its C-terminus PubMed.
- An antisense RNA is predicted for sda PubMed
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Justin S Lenhart, Jeremy W Schroeder, Brian W Walsh, Lyle A Simmons
DNA repair and genome maintenance in Bacillus subtilis.
Microbiol Mol Biol Rev: 2012, 76(3);530-64
[PubMed:22933559]
[WorldCat.org]
[DOI]
(I p)
Original publications
Janet L Smith, Alan D Grossman
In Vitro Whole Genome DNA Binding Analysis of the Bacterial Replication Initiator and Transcription Factor DnaA.
PLoS Genet: 2015, 11(5);e1005258
[PubMed:26020636]
[WorldCat.org]
[DOI]
(I e)
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
Jan-Willem Veening, Heath Murray, Jeff Errington
A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis.
Genes Dev: 2009, 23(16);1959-70
[PubMed:19684115]
[WorldCat.org]
[DOI]
(I p)
David A Jacques, Margaret Streamer, Susan L Rowland, Glenn F King, J Mitchell Guss, Jill Trewhella, David B Langley
Structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis and insights into its solution state.
Acta Crystallogr D Biol Crystallogr: 2009, 65(Pt 6);574-81
[PubMed:19465772]
[WorldCat.org]
[DOI]
(I p)
Matthew J Bick, Valerie Lamour, Kanagalaghatta R Rajashankar, Yuliya Gordiyenko, Carol V Robinson, Seth A Darst
How to switch off a histidine kinase: crystal structure of Geobacillus stearothermophilus KinB with the inhibitor Sda.
J Mol Biol: 2009, 386(1);163-77
[PubMed:19101565]
[WorldCat.org]
[DOI]
(I p)
Shu Ishikawa, Yoshitoshi Ogura, Mika Yoshimura, Hajime Okumura, Eunha Cho, Yoshikazu Kawai, Ken Kurokawa, Taku Oshima, Naotake Ogasawara
Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method.
DNA Res: 2007, 14(4);155-68
[PubMed:17932079]
[WorldCat.org]
[DOI]
(P p)
Andrew E Whitten, David A Jacques, Boualem Hammouda, Tracey Hanley, Glenn F King, J Mitchell Guss, Jill Trewhella, David B Langley
The structure of the KinA-Sda complex suggests an allosteric mechanism of histidine kinase inhibition.
J Mol Biol: 2007, 368(2);407-20
[PubMed:17350039]
[WorldCat.org]
[DOI]
(P p)
Michael V Ruvolo, Kathleen E Mach, William F Burkholder
Proteolysis of the replication checkpoint protein Sda is necessary for the efficient initiation of sporulation after transient replication stress in Bacillus subtilis.
Mol Microbiol: 2006, 60(6);1490-508
[PubMed:16796683]
[WorldCat.org]
[DOI]
(P p)
Nora Au, Elke Kuester-Schoeck, Veena Mandava, Laura E Bothwell, Susan P Canny, Karen Chachu, Sierra A Colavito, Shakierah N Fuller, Eli S Groban, Laura A Hensley, Theresa C O'Brien, Amish Shah, Jessica T Tierney, Louise L Tomm, Thomas M O'Gara, Alexi I Goranov, Alan D Grossman, Charles M Lovett
Genetic composition of the Bacillus subtilis SOS system.
J Bacteriol: 2005, 187(22);7655-66
[PubMed:16267290]
[WorldCat.org]
[DOI]
(P p)
Susan L Rowland, William F Burkholder, Katherine A Cunningham, Mark W Maciejewski, Alan D Grossman, Glenn F King
Structure and mechanism of action of Sda, an inhibitor of the histidine kinases that regulate initiation of sporulation in Bacillus subtilis.
Mol Cell: 2004, 13(5);689-701
[PubMed:15023339]
[WorldCat.org]
[DOI]
(P p)
W F Burkholder, I Kurtser, A D Grossman
Replication initiation proteins regulate a developmental checkpoint in Bacillus subtilis.
Cell: 2001, 104(2);269-79
[PubMed:11207367]
[WorldCat.org]
[DOI]
(P p)
