Difference between revisions of "YwcI"

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(Expression and regulation)
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''[[ywcI]]'' {{PubMed|21815947}}  
+
* '''Operon:''' ''[[ywcI]]-[[sacT]]'' {{PubMed|22383849}}  
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywcI_3907012_3907314_-1 ywcI] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywcI_3907012_3907314_-1 ywcI] {{PubMed|22383849}}
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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** DnaA: transcription repression {{PubMed|21815947}}
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  

Revision as of 09:15, 1 June 2015

  • Description: unknown

Gene name ywcI
Synonyms ipa-46d
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ywcI
MW, pI 11 kDa, 11.112
Gene length, protein length 300 bp, 100 aa
Immediate neighbours sacT, vpr
Sequences Protein DNA DNA_with_flanks
Genetic context
YwcI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwcI expression.png
























Categories containing this gene/protein

proteins of unknown function, sporulation proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU38080

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: repressed by casamino acids PubMed
  • Regulatory mechanism:
    • DnaA: transcription repression PubMed
  • Additional information:
    • the mRNA is substantially stabilized upon depletion of RNase Y PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Martin Lehnik-Habrink, Marc Schaffer, Ulrike Mäder, Christine Diethmaier, Christina Herzberg, Jörg Stülke
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y.
Mol Microbiol: 2011, 81(6);1459-73
[PubMed:21815947] [WorldCat.org] [DOI] (I p)

Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147] [WorldCat.org] [DOI] (P p)