yybP

168

membrane protein, may be involved in manganese detoxification

Locus: BSU_40560

Molecular weight: 15.83 kDa

Isoelectric point: 4.24

Protein length: 148 aa

Gene length: 447 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: yybP

Genomic Context

Hide small RNAsZoom:

Categories containing this gene/protein

Lifestyles, Sporulation, Sporulation proteins, Newly identified sporulation proteins (based on transcription profiling)

Groups of genes, Membrane proteins

List of homologs in different organisms

This gene is a member of the following regulons

YybP-ykoY motif

Gene

Coordinates: 4,169,166 → 4,169,612

The protein

Structure

3LLL (PDB) (from the mouse, 28% identity) PubMed
P37488 (AlphaFold)

Localization

cell membrane (according to UniProt)

Expression and Regulation

Operons

Genes: yybP

Description: PubMed

Regulation

induced in the presence of Mn²⁺ (yybP-ykoY motif) PubMed
the RNA switch RNA is degraded by RNase Y PubMed

Regulatory mechanism

yybP-ykoY motif: RNA switch, in the presence of the ligand Mn²⁺ PubMed, in yybP-ykoY motif

Biological materials

Mutant

MGNA-B838 (yybP::erm), available at the NBRP B. subtilis, Japan
BKE40560 (ΔyybP::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTTCAGCCCCCTCATCG,  downstream forward: _UP4_TAAGAAAAAGCATCCCGACG
BKK40560 (ΔyybP::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTTCAGCCCCCTCATCG,  downstream forward: _UP4_TAAGAAAAAGCATCCCGACG

References

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