Difference between revisions of "YocR"

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=== Additional information===
 
=== Additional information===
 
 
  
  
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* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU19340&redirect=T BSU19340]
 
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU19340&redirect=T BSU19340]
  
* '''Structure:'''
+
* '''Structure:''' [http://pdb.org/pdb/explore/explore.do?structureId=4US4 4US4] (the protein from ''B. halodurans'', 45% identity, 77% similarity) {{PubMed|25282149}}
  
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34383 O34383]
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34383 O34383]
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=References=
 
=References=
  
<pubmed>18763711, </pubmed>
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<pubmed>18763711, 25282149</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 18:06, 16 February 2015

  • Description: similar to sodium-dependent transporter

Gene name yocR
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yocR
MW, pI 48 kDa, 9.592
Gene length, protein length 1335 bp, 445 aa
Immediate neighbours sodF, yocS
Sequences Protein DNA DNA_with_flanks
Genetic context
YocR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YocR expression.png















Categories containing this gene/protein

transporters/ other, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU19340

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: iron/manganese superoxide dismutase family (according to Swiss-Prot)
  • Paralogous protein(s): YhdH

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 4US4 (the protein from B. halodurans, 45% identity, 77% similarity) PubMed
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References