Difference between revisions of "YxkO"
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxkO_3972448_3973278_-1 yxkO] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxkO_3972448_3973278_-1 yxkO] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | + | * '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | <pubmed>15805528,10746760 12457846 22940582</pubmed> | + | <pubmed>15805528,10746760 12457846 22940582 25393291 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:51, 14 November 2014
- Description: ADP/ATP-dependent NAD(P)H-hydrate dehydratase, general stress protein, survival of ethanol stress
| Gene name | yxkO |
| Synonyms | |
| Essential | no |
| Product | ADP/ATP-dependent NAD(P)H-hydrate dehydratase |
| Function | survival of ethanol stress |
| Gene expression levels in SubtiExpress: yxkO | |
| MW, pI | 29 kDa, 5.488 |
| Gene length, protein length | 828 bp, 276 aa |
| Immediate neighbours | yxlA, cydD |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB)
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU38720
Phenotypes of a mutant
Database entries
- BsubCyc: BSU38720
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- BsubCyc: BSU38720
- Structure: 1KYH
- UniProt: P94368
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: yxkO PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Miroslava Petrovova, Jan Tkadlec, Lukas Dvoracek, Eliska Streitova, Irena Licha
NAD(P)H-hydrate dehydratase- a metabolic repair enzyme and its role in Bacillus subtilis stress adaptation.
PLoS One: 2014, 9(11);e112590
[PubMed:25393291]
[WorldCat.org]
[DOI]
(I e)
Igor A Shumilin, Marcin Cymborowski, Olga Chertihin, Kula N Jha, John C Herr, Scott A Lesley, Andrzej Joachimiak, Wladek Minor
Identification of unknown protein function using metabolite cocktail screening.
Structure: 2012, 20(10);1715-25
[PubMed:22940582]
[WorldCat.org]
[DOI]
(I p)
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
R-g Zhang, J Grembecka, E Vinokour, F Collart, I Dementieva, W Minor, A Joachimiak
Structure of Bacillus subtilis YXKO--a member of the UPF0031 family and a putative kinase.
J Struct Biol: 2002, 139(3);161-70
[PubMed:12457846]
[WorldCat.org]
[DOI]
(P p)
Ken-Ichi Yoshida, Izumi Ishio, Eishi Nagakawa, Yoshiyuki Yamamoto, Mami Yamamoto, Yasutaro Fujita
Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome.
Microbiology (Reading): 2000, 146 ( Pt 3);573-579
[PubMed:10746760]
[WorldCat.org]
[DOI]
(P p)
