yhdQ

168

putative transcriptional regulator (MerR family)

Locus: BSU_09560

Molecular weight: 16.25 kDa

Isoelectric point: 7.89

Protein length: 143 aa

Gene length: 432 bp

Function: unknown

Product: transcriptional regulator (MerR family)

Essential: no

Synonyms: yhdQ, cueR

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG0789 (Galperin et al., 2021)

Gene

Coordinates: 1,033,458 → 1,033,889

Phenotypes of a mutant

• altered biofilm morphology (very flat) 35663026

The protein

Protein family

• MerR family

Domains

• HTH merR-type domain (aa 11-79) (according to UniProt)

Structure

• 6JGV (PDB) (from Pseudomonas putida, corresponds to aa 13 ... 115, 34% identity) PubMed
• O07586 (AlphaFold)

Expression and Regulation

Operons

• Genes: yhdQ-mpfA

  Description: PubMed

Biological materials

Mutant

• MGNA-B484 (yhdQ::erm), available at the NBRP B. subtilis, Japan
• BKE09560 (ΔyhdQ::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCACGTTATAGTTATGAG,  downstream forward: _UP4_TAAAACCATTTTATCTAACA
• BKK09560 (ΔyhdQ::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCACGTTATAGTTATGAG,  downstream forward: _UP4_TAAAACCATTTTATCTAACA

References

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