yydK

168

similar to transcriptional regulator (GntR family)

Locus: BSU_40130

Molecular weight: 27.13 kDa

Isoelectric point: 5.19

Protein length: 236 aa

Gene length: 711 bp

Function: unknown

Product: transcriptional regulator (GntR family)

Essential: no

Synonyms: yydK

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG2188 (Galperin et al., 2021)

Gene

Coordinates: 4,123,193  4,123,903

The protein

Protein family

• GntR family of transcription factors

Domains

• HTH gntR-type domain (aa 1-69) (according to UniProt)

Structure

• 3BWG (PDB)
• Q45591 (AlphaFold)

Paralogous protein(s)

• GmuR, NagR, TreR, GamR, FrlR

Expression and Regulation

Operons

• Genes: yydK-yyzN

  Description: PubMed

Biological materials

Mutant

• MGNA-B806 (yydK::erm), available at the NBRP B. subtilis, Japan
• BKE40130 (yydK::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATACGCATTCCTCATTTAT,  downstream forward: _UP4_TAGGGCTCTTCACTACGGTA
• BKK40130 (yydK::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATACGCATTCCTCATTTAT,  downstream forward: _UP4_TAGGGCTCTTCACTACGGTA

References

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