ymfC

168

similar to transcriptional regulator (GntR family)

Locus: BSU_16810

Molecular weight: 27.75 kDa

Isoelectric point: 6.4

Protein length: 241 aa

Gene length: 726 bp

Function: unknown

Product: transcriptional regulator (GntR family)

Essential: no

Synonyms: ymfC

Genomic Context

Hide small RNAsZoom:

Categories containing this gene/protein

Information processing, Regulation of gene expression, Transcription factors and their control, Transcription factor/ other/ based on similarity

List of homologs in different organisms, belongs to COG2188 (Galperin et al., 2021)

This gene is a member of the following regulons

SigA regulon

Gene

Coordinates: 1,754,785 → 1,755,510

The protein

Protein family

GntR family of transcription factors

Domains

HTH gntR-type domain (aa 8-76) (according to UniProt)

Structure

2WV0 (PDB) (NagR, corresponds to aa 83 ... 307 of YmfC, 30% identity)
O31761 (AlphaFold)

Paralogous protein(s)

GamR, NagR, GmuR, FrlR, TreR

Expression and Regulation

Operons

Genes: ymfC

Description: PubMed

Genes: spoIIIE-ymfC

Description: PubMed

Sigma factors

SigA: sigma factor, PubMed, in sigA regulon

Biological materials

Mutant

MGNA-B115 (ymfC::erm), available at the NBRP B. subtilis, Japan
BKE16810 (ΔymfC::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGTTTCCCCTCCGTAAAC,  downstream forward: _UP4_TAAAAACGGACGCCTGTATG
BKK16810 (ΔymfC::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGTTTCCCCTCCGTAAAC,  downstream forward: _UP4_TAAAAACGGACGCCTGTATG

References

Loading