YpsC

• Description: similar to SAM-dependent 23S rRNA methyltransferase
  
  

Gene name	ypsC
Synonyms
Essential	no
Product	23S rRNA methyltransferase
Function	rRNA modification
Gene expression levels in SubtiExpress: ypsC
MW, pI	43 kDa, 8.011
Gene length, protein length	1155 bp, 385 aa
Immediate neighbours	ypzG, rnpB
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

translation

The gene

Basic information

• Locus tag: BSU22170

Database entries

• BsubCyc: BSU22170

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family:

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:
  • YpsC interacts with the RNA polymerase PubMed

• Localization:

Database entries

• BsubCyc: BSU22170

• Structure:

• UniProt: P50840

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: ypsC PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information:
  • number of protein molecules per cell (minimal medium with glucose and ammonium): 79 PubMed
  • number of protein molecules per cell (complex medium with amino acids, without glucose): 380 PubMed

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Olivier Delumeau, François Lecointe, Jan Muntel, Alain Guillot, Eric Guédon, Véronique Monnet, Michael Hecker, Dörte Becher, Patrice Polard, Philippe Noirot
The dynamic protein partnership of RNA polymerase in Bacillus subtilis.
Proteomics: 2011, 11(15);2992-3001
[PubMed:21710567] [WorldCat.org] [DOI] (I p)

Dmitry V Lesnyak, Petr V Sergiev, Alexey A Bogdanov, Olga A Dontsova
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
J Mol Biol: 2006, 364(1);20-5
[PubMed:17010378] [WorldCat.org] [DOI] (P p)