yxkD

168

unknown

Locus: BSU_38840

Molecular weight: 30.58 kDa

Isoelectric point: 8.61

Protein length: 278 aa

Gene length: 837 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: yxkD

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG1284 (Galperin et al., 2021)

Gene

Coordinates: 3,987,927  3,988,763

The protein

Protein family

• UPF0750 membrane proteins (according to UniProt)

Structure

• P94357 (AlphaFold)

Localization

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• Genes: yxkD

  Description: PubMed

  Regulation

  • induced in the presence of guanidine (ykkC riboswitch) PubMed

  Regulatory mechanism

  • E9866855F0156859C45E98F3B385FE1263BB7EBC: RNA switch, in E9866855F0156859C45E98F3B385FE1263BB7EBC

  Additional information

  • term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of yxkD PubMed

Biological materials

Mutant

• MGNA-B738 (yxkD::erm), available at the NBRP B. subtilis, Japan
• BKE38840 (yxkD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCACGAAAACACTCCTTT,  downstream forward: _UP4_TAAAGAAAAATCCCTCTGTA
• BKK38840 (yxkD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCACGAAAACACTCCTTT,  downstream forward: _UP4_TAAAGAAAAATCCCTCTGTA

References

Reviews

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Original Publications

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