yxkD

168

unknown

locus: BSU_38840

Molecular weight: 30.58 kDa

pI: 8.61

Protein length: 278 aa

Gene length: 837 bp

function: unknown

product: unknown

essential: no

synonyms: yxkD

List of homologs in different organisms, belongs to COG1284 (Galperin et al., 2021)

Gene

Coordinates: 3,987,927  3,988,763

The protein

Protein family

• [wiki|UPF0750 membrane proteins] (according to UniProt)

Structure

• [AF|P94357]

[wiki|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]

  description: [Pubmed|10746760]

  regulation

  • induced in the presence of guanidine ([wiki|ykkC riboswitch]) [Pubmed|27989440]

  regulatory mechanism

  • E9866855F0156859C45E98F3B385FE1263BB7EBC: RNA switch, in [regulon|other_regulator:E9866855F0156859C45E98F3B385FE1263BB7EBC|E9866855F0156859C45E98F3B385FE1263BB7EBC]

  additional information

  • term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of ''yxkD'' [Pubmed|27120414]

Biological materials

Mutant

• MGNA-B738 (yxkD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1737 NBRP B. subtilis, Japan]
• BKE38840 ([gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE38840 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCACGAAAACACTCCTTT,  downstream forward: _UP4_TAAAGAAAAATCCCTCTGTA
• BKK38840 ([gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK38840 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCACGAAAACACTCCTTT,  downstream forward: _UP4_TAAAGAAAAATCCCTCTGTA

References

Reviews

• 28060483

Original Publications

• 15096624,10746760,21317561,27120414,27989440