yxkH

168

similar to polysaccharide deacetylase

Locus: BSU_38800

Molecular weight: 31.26 kDa

Isoelectric point: 7.8

Protein length: 279 aa

Gene length: 840 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: yxkH

Genomic Context

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Categories containing this gene/protein

Groups of genes, Membrane proteins

Groups of genes, Proteins of unknown function

List of homologs in different organisms, belongs to COG0726 (Galperin et al., 2021)

This gene is a member of the following regulons

SigD regulon

Gene

Coordinates: 3,983,187 → 3,984,026

The protein

Protein family

polysaccharide deacetylase family (according to UniProt)

Domains

NodB homology domain (aa 119-279) (according to UniProt)

Structure

1HD5 (PDB) (from B. cereus, 30% identity)
P94361 (AlphaFold)

Localization

cell membrane (according to UniProt)

Expression and Regulation

Operons

Genes: yxkH

Description: PubMed

Sigma factors

SigD: sigma factor, PubMed, in sigD regulon

Biological materials

Mutant

MGNA-B742 (yxkH::erm), available at the NBRP B. subtilis, Japan
BKE38800 (ΔyxkH::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG,  downstream forward: _UP4_TCAATGAAATAAAAAAAGGC
BKK38800 (ΔyxkH::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG,  downstream forward: _UP4_TCAATGAAATAAAAAAAGGC

References

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