yvdA

168

similar to carbonic anhydrase

Locus: BSU_34670

Molecular weight: 21.57 kDa

Isoelectric point: 6.88

Protein length: 197 aa

Gene length: 594 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: yvdA

Genomic Context

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Categories containing this gene/protein

Metabolism, Carbon metabolism, Acquisition of bicarbonate

Groups of genes, Poorly characterized/ putative enzymes

List of homologs in different organisms, belongs to COG0288 (Galperin et al., 2021)

Gene

Coordinates: 3,561,590 → 3,562,183

The protein

Catalyzed reaction/ biological activity

H⁺ + hydrogencarbonate --> CO₂ + H₂O (according to UniProt)

Protein family

beta-class carbonic anhydrase family (with YbcF and YtiB, according to UniProt)

Structure

1G5C (PDB) (from Methanobacterium thermoautotrophicum 40% identity) PubMed
O06983 (AlphaFold)

Paralogous protein(s)

YtiB
YbcF, Array

Expression and Regulation

Operons

Genes: yvdA-yvdB

Description: PubMed

Biological materials

Mutant

MGNA-B632 (yvdA::erm), available at the NBRP B. subtilis, Japan
BKE34670 (ΔyvdA::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTCCCATCCATATGATT,  downstream forward: _UP4_TCATAAGGGAGGTTATAACA
BKK34670 (ΔyvdA::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTCCCATCCATATGATT,  downstream forward: _UP4_TCATAAGGGAGGTTATAACA

References

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