yvaM

168

similar to hydrolase

Locus: BSU_33640

Molecular weight: 29.43 kDa

Isoelectric point: 8.99

Protein length: 256 aa

Gene length: 771 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: yvaM

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG0596 (Galperin et al., 2021)

Gene

Coordinates: 3,455,472  3,456,242

The protein

Protein family

• AB hydrolase superfamily (according to UniProt)

Domains

• AB hydrolase-1 domain (aa 22-122) (according to UniProt)

Structure

• 5EGN (PDB) (26% identity)
• O32234 (AlphaFold)

Paralogous protein(s)

• YdjP, (39,4%)

Expression and Regulation

Operons

• Genes: yvaM

  Description: (according to DBTBS) null

  Regulation

  • repressed by RghR PubMed

  Regulatory mechanism

  • RghR: repression, PubMed, in rghR regulon

Biological materials

Mutant

• MGNA-A447 (yvaM::erm), available at the NBRP B. subtilis, Japan
• BKE33640 (yvaM::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCGCTTTTCTCCTTTGAC,  downstream forward: _UP4_TAGGAATAGAAAACGCTTGG
• BKK33640 (yvaM::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCGCTTTTCTCCTTTGAC,  downstream forward: _UP4_TAGGAATAGAAAACGCTTGG

References

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