ytrD

168

ABC transporter (hydrophobic protein, probably channel protein)

Locus: BSU_30430

Molecular weight: 36.28 kDa

Isoelectric point: 9.09

Protein length: 325 aa

Gene length: 978 bp

Function: unknown

Product: ABC transporter (hydrophobic protein, probably channel protein)

Essential: no

Synonyms: ytrD

Genomic Context

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List of homologs in different organisms

Gene

Coordinates: 3,115,989  3,116,966

The protein

Protein family

• ABC-5 integral membrane protein family (with YtrC, according to UniProt)

Structure

• O34953 (AlphaFold)

Paralogous protein(s)

• YtrC

Localization

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• Genes: ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF

  Description: PubMed

  Regulation

  • expressed early in the stationary phase PubMed

  Regulatory mechanism

  • YtrA: repression, PubMed, in ytrA regulon

  Sigma factors

  • SigA: sigma factor, PubMed, in sigA regulon

Biological materials

Mutant

• GP3190 (ΔytrD), available in Jörg Stülke's lab PubMed
• GP3205 Δ(ytrC-ytrD)::cat, available in Jörg Stülke's lab PubMed
• GP2646 Δ(ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF)::ermC, available in Jörg Stülke's lab PubMed
• MGNA-B538 (ytrD::erm), available at the NBRP B. subtilis, Japan
• BKE30430 (ytrD::erm  trpC2) available at BGSC and in Jörg Stülke's lab,  PubMed, upstream reverse: _UP1_CAACTCACTTCCCTCCAAAC,  downstream forward: _UP4_TAAGGGAGAGAGAACATATG
• BKK30430 (ytrD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CAACTCACTTCCCTCCAAAC,  downstream forward: _UP4_TAAGGGAGAGAGAACATATG

References

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