Difference between revisions of "TrmB"

From SubtiWiki
Jump to: navigation, search
Line 56: Line 56:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU29900&redirect=T BSU29900]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ytmQ.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ytmQ.html]
Line 93: Line 94:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU29900&redirect=T BSU29900]
  
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2FCA 2FCA]
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2FCA 2FCA]

Revision as of 14:32, 2 April 2014

  • Description: tRNA (m7G46) methyltransferase

Gene name trmB
Synonyms ytmQ
Essential no
Product tRNA (m7G46) methyltransferase
Function tRNA modification
Gene expression levels in SubtiExpress: trmB
MW, pI 24 kDa, 6.351
Gene length, protein length 639 bp, 213 aa
Immediate neighbours ytnP, ytzH
Sequences Protein DNA DNA_with_flanks
Genetic context
YtmQ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
TrmB expression.png
























Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU29900

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N(7)-methylguanine (according to Swiss-Prot)
  • Protein family: TrmB family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References