Difference between revisions of "RpsD"
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU29660&redirect=T BSU29660] | ||
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rpsD.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rpsD.html] | ||
| Line 95: | Line 96: | ||
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU29660&redirect=T BSU29660] | ||
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1C06 1C06] (Geobacillus stearothermophilus) | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1C06 1C06] (Geobacillus stearothermophilus) | ||
Revision as of 14:31, 2 April 2014
- Description: ribosomal protein
| Gene name | rpsD |
| Synonyms | |
| Essential | yes PubMed |
| Product | ribosomal protein S4 (BS4) |
| Function | translation |
| Gene expression levels in SubtiExpress: rpsD | |
| Interactions involving this protein in SubtInteract: RpsD | |
| MW, pI | 22 kDa, 10.243 |
| Gene length, protein length | 600 bp, 200 aa |
| Immediate neighbours | dgcP, tyrS |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
translation, essential genes, universally conserved proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU29660
Phenotypes of a mutant
essential PubMed
Database entries
- BsubCyc: BSU29660
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ribosomal protein S4P family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU29660
- Structure: 1C06 (Geobacillus stearothermophilus)
- UniProt: P21466
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- RelA dependent downregulation (Class I) during stringent response PubMed
- autorepression of rpsD expression upon binding of excess RpsD to a RNA switch in the untranslated region of the rpsD mRNA PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
